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1

Modeling the Paradoxical Increase in Mitochondrial Calcium Buffering Power as Matrix Calcium Increases

Bazil, Jason N., Pradhan, Ranjan K., Blomeyer, Christoph A., Camara, Amadou K.S., Stowe, David F., Dash, Ranjan K.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 38 KB

english, 2012

2

Temporal and regional intestinal changes in permeability, tight junction, and cytokine gene expression following ovariectomy‐induced estrogen deficiency

Collins, Fraser L., Rios‐Arce, Naiomy D., Atkinson, Shelby, Bierhalter, Hayley, Schoenherr, Daniel, Bazil, Jason N., McCabe, Laura R., Parameswaran, Narayanan

Journal:

Physiological Reports

Year:

2017

Language:

english

File:

PDF, 4.39 MB

english, 2017

3

A bioenergetic model of the mitochondrial population undergoing permeability transition

Jason N. Bazil, Gregery T. Buzzard, Ann E. Rundell

Journal:

Journal of Theoretical Biology

Year:

2010

Language:

english

File:

PDF, 762 KB

english, 2010

4

A Global Parallel Model Based Design of Experiments Method to Minimize Model Output Uncertainty

Jason N. Bazil, Gregory T. Buzzard, Ann E. Rundell

Journal:

Bulletin of Mathematical Biology

Year:

2012

Language:

english

File:

PDF, 6.48 MB

english, 2012

5

A Biophysical Model of the Mitochondrial ATP-Mg/Pi Carrier

Tewari, Shivendra G., Dash, Ranjan K., Beard, Daniel A., Bazil, Jason N.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 384 KB

english, 2012

6

A Parallel Algorithm for Reverse Engineering Gene Regulatory Networks

Bazil, Jason, Qi, Feng, Beard, Daniel A.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 50 KB

english, 2012

7

Sodium-Induced Calcium Flux via Mitochondrial NCE is Dissimilar when Derived from Matrix and Extra-Matrix Calcium Ion Concentrations

Blomeyer, Christoph A., Stowe, David F., Pradhan, Ranjan K., Bazil, Jason N., Dash, Ranjan K., Camara, Amadou K.S.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 38 KB

english, 2012

8

Modeling the calcium sequestration system in isolated guinea pig cardiac mitochondria

Bazil, Jason N., Blomeyer, Christoph A., Pradhan, Ranjan K., Camara, Amadou K. S., Dash, Ranjan K.

Journal:

Journal of Bioenergetics and Biomembranes

Year:

2013

Language:

english

File:

PDF, 881 KB

english, 2013

9

Dynamic buffering of mitochondrial Ca2+during Ca2+uptake and Na+-induced Ca2+release

Christoph A. Blomeyer, Jason N. Bazil…

Journal:

Journal of Bioenergetics and Biomembranes

Year:

2013

Language:

english

File:

PDF, 771 KB

english, 2013

10

Abstracts

Bazil, Jason N., Vinnakota, Kalyan C., Wu, Fan, Beard, Daniel A.

Journal:

Journal of the American Academy of Dermatology

Year:

1987

Language:

english

File:

PDF, 102 KB

english, 1987

11

Analysis of the Kinetics and Bistability of Ubiquinol:Cytochrome c Oxidoreductase

Bazil, Jason N., Vinnakota, Kalyan C., Wu, Fan, Beard, Daniel A.

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 1.85 MB

english, 2013

12

The Potential for Another Calcium Uptake Mode in Cardiac Mitochondria

Blomeyer, Christoph A., Bazil, Jason N., Stowe, David F., Dash, Ranjan K., Camara, Amadou K.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 51 KB

english, 2014

13

A Minimal Model of Ubiquinol:Cytochrome C Reductase Capable of Simulating Superoxide Production

Bazil, Jason, Vinnakota, Kalyan C., Fan, Wu, Beard, Daniel A.

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 38 KB

english, 2013

14

A biophysically based mathematical model for the catalytic mechanism of glutathione reductase

Pannala, Venkat R., Bazil, Jason N., Camara, Amadou K.S., Dash, Ranjan K.

Journal:

Free Radical Biology and Medicine

Year:

2013

Language:

english

File:

PDF, 3.57 MB

english, 2013

15

Determining the origins of superoxide and hydrogen peroxide in the mammalian NADH:ubiquinone oxidoreductase

Bazil, Jason N., Pannala, Venkat R., Dash, Ranjan K., Beard, Daniel A.

Journal:

Free Radical Biology and Medicine

Year:

2014

Language:

english

File:

PDF, 3.54 MB

english, 2014

16

A parallel algorithm for reverse engineering of biological networks

Bazil, Jason N., Qi, Feng, Beard, Daniel A.

Journal:

Integrative Biology

Year:

2011

Language:

english

File:

PDF, 2.21 MB

english, 2011

17

A pH-Dependent Kinetic Model of Dihydrolipoamide Dehydrogenase from Multiple Organisms

Moxley, Michael A., Beard, Daniel A., Bazil, Jason N.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 2.78 MB

english, 2014

18

Modeling Mitochondrial Bioenergetics with Integrated Volume Dynamics

Bazil, Jason N., Buzzard, Gregery T., Rundell, Ann E., Beard, Daniel A.

Journal:

PLoS Computational Biology

Year:

2010

Language:

english

File:

PDF, 707 KB

english, 2010

19

Catalytic Coupling of Oxidative Phosphorylation, ATP Demand, and Reactive Oxygen Species Generation

Bazil, Jason N., Beard, Daniel A., Vinnakota, Kalyan C.

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 1.02 MB

english, 2016

20

Global Kinetic Analysis of Mammalian E3 Reveals pH-dependent NAD + /NADH Regulation, Physiological Kinetic Reversibility, and Catalytic Optimum

Moxley, Michael A., Beard, Daniel A., Bazil, Jason N.

Journal:

Journal of Biological Chemistry

Year:

2016

File:

PDF, 7.66 MB

2016

21

Global Kinetic Analysis of Mammalian E3 Reveals pH-dependent NAD + /NADH Regulation, Physiological Kinetic Reversibility, and Catalytic Optimum

Moxley, Michael A., Beard, Daniel A., Bazil, Jason N.

Journal:

Journal of Biological Chemistry

Year:

2016

Language:

english

File:

PDF, 7.66 MB

english, 2016

22

Feedback Regulation and Time Hierarchy of Oxidative Phosphorylation in Cardiac Mitochondria

Vinnakota, Kalyan C., Bazil, Jason N., Van den Bergh, Françoise, Wiseman, Robert W., Beard, Daniel A.

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 620 KB

english, 2016

23

Simulating Free Radical Production from Complex I

Bazil, Jason, Pannala, Venkat, Dash, Ranjan, Beard, Daniel

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 42 KB

english, 2015

24

Mg2+differentially regulates two modes of mitochondrial Ca2+uptake in isolated cardiac mitochondria: implications for mitochondrial Ca2+sequestration

Blomeyer, Christoph A., Bazil, Jason N., Stowe, David F., Dash, Ranjan K., Camara, Amadou K. S.

Journal:

Journal of Bioenergetics and Biomembranes

Year:

2016

Language:

english

File:

PDF, 2.46 MB

english, 2016

25

A Functional Dimer Model of Ubiquinol Cytochrome C Oxidoreductase

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 43 KB

english, 2017

26

The feasibility of genome-scale biological network inference using Graphics Processing Units

Thiagarajan, Raghuram, Alavi, Amir, Podichetty, Jagdeep T., Bazil, Jason N., Beard, Daniel A.

Journal:

Algorithms for Molecular Biology

Year:

2017

Language:

english

File:

PDF, 2.10 MB

english, 2017

27

Analysis of a Functional Dimer Model of Ubiquinol Cytochrome c Oxidoreductase

Bazil, Jason N.

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 2.56 MB

english, 2017

28

Excellent clinical outcomes and retention in care for adults with HIV-associated Kaposi sarcoma treated with systemic chemotherapy and integrated antiretroviral therapy in rural Malawi

Herce, Michael E, Kalanga, Noel, Wroe, Emily B, Keck, James W, Chingoli, Felix, Tengatenga, Listern, Gopal, Satish, Phiri, Atupere, Mailosi, Bright, Bazile, Junior, Beste, Jason A, Elmore, Shekinah N,

Journal:

Journal of the International AIDS Society

Year:

2015

Language:

english

File:

PDF, 654 KB

english, 2015

29

Systems-level computational modeling demonstrates fuel selection switching in high capacity running and low capacity running rats

Moxley, Michael A., Vinnakota, Kalyan C., Bazil, Jason N., Qi, Nathan R., Beard, Daniel A., Bakker, Barbara M.

Journal:

PLoS Computational Biology

Year:

2018

Language:

english

File:

PDF, 12.45 MB

english, 2018

30

The Inferred Cardiogenic Gene Regulatory Network in the Mammalian Heart

Bazil, Jason N., Stamm, Karl D., Li, Xing, Thiagarajan, Raghuram, Nelson, Timothy J., Tomita-Mitchell, Aoy, Beard, Daniel A., Csermely, Peter

Journal:

Year:

2014

Language:

english

File:

PDF, 3.70 MB

english, 2014

31

Human Cardiac 31P-MR Spectroscopy at 3 Tesla Cannot Detect Failing Myocardial Energy Homeostasis during Exercise

Bakermans, Adrianus J., Bazil, Jason N., Nederveen, Aart J., Strijkers, Gustav J., Boekholdt, S. Matthijs, Beard, Daniel A., Jeneson, Jeroen A. L.

Journal:

Frontiers in Physiology

Year:

2017

Language:

english

File:

PDF, 2.20 MB

english, 2017

32

Skeletal Muscle Energetics are Compromised Only During High Intensity Contractions in the Goto-Kakizaki Rat Model of Type 2 Diabetes

Lewis, Matthew T., Kasper, Jonathan David, Bazil, Jason N., Frisbee, Jefferson C., Wiseman, Robert W.

Journal:

American Journal of Physiology. Regulatory, Integrative and Comparative Physiology

Year:

2019

Language:

english

File:

PDF, 774 KB

english, 2019

33

Skeletal Muscle Energetics are Compromised Only During High Intensity Contractions in the Goto-Kakizaki Rat Model of Type 2 Diabetes

Lewis, Matthew T., Kasper, Jonathan David, Bazil, Jason N., Frisbee, Jefferson C., Wiseman, Robert W.

Journal:

American Journal of Physiology. Regulatory, Integrative and Comparative Physiology

Year:

2019

File:

PDF, 774 KB

2019

34

Quantification of Mitochondrial Oxidative Phosphorylation in Metabolic Disease: Application to Type 2 Diabetes

Lewis, Matthew T., Kasper, Jonathan D., Bazil, Jason N., Frisbee, Jefferson C., Wiseman, Robert W.

Journal:

International Journal of Molecular Sciences

Year:

2019

Language:

english

File:

PDF, 3.10 MB

english, 2019

35

Silica-Coated Nanoparticles with a Core of Zinc, l -Arginine, and a Peptide Designed for Oral Delivery

Hristov, Delyan, McCartney, Fiona, Beirne, Jason, Mahon, Eugene, Reid, Stephanie, Bhattacharjee, Sourav, Penarier, Geraldine, Werner, Ulrich, Bazile, Didier, Brayden, David J.

Journal:

ACS Applied Materials & Interfaces

Year:

2019

File:

PDF, 1.92 MB

2019

36

Sea lamprey cardiac mitochondrial bioenergetics after exposure to TFM and its metabolites

Huerta, Belinda, Chung-Davidson, Yu-Wen, Bussy, Ugo, Zhang, Yizhu, Bazil, Jason N., Li, Weiming

Journal:

Aquatic Toxicology

Year:

2020

File:

PDF, 576 KB

2020

37

Micro-respirometry of whole cells and isolated mitochondria

Levitsky, Yan, Pegouske, David J., Hammer, Sandra S., Frantz, Nathan L., Fisher, Kiera P., Muchnik, Artem B., Saripalli, Anand R., Kirschner, Philip, Bazil, Jason N., Busik, Julia V., Proshlyakov, Den

Journal:

Year:

2019

File:

PDF, 1.27 MB

2019

38

Calcium Overload Decreases Net Free Radical Emission in Cardiac Mitochondria

Duong, Quynh V., Hoffman, Adrianna, Zhong, Katie, Dessinger, Maria J., Zhang, Yizhu, Bazil, Jason N.

Journal:

Year:

2020

Language:

english

File:

PDF, 1.16 MB

english, 2020

39

Editorial: Genetic Modification of Cardiac Tissue

Camara, Amadou K. S., Stowe, David F., O-Uchi, Jin, Bazil, Jason N.

Journal:

Frontiers in Cardiovascular Medicine

Year:

2019

File:

PDF, 178 KB

2019

40

Regulation of lipid metabolism in pancreatic beta cells by interferon gamma: A link to anti-viral function

Truong, Nguyen T.T., Lydic, Todd A., Bazil, Jason N., Suryadevara, Abhijeet, Olson, L. Karl

Journal:

Year:

2020

File:

PDF, 2.65 MB

2020

41

Determination of the Number of Permeability Transition Pores in Single Mitochondrion

Neginskaya, Maria A., Strubbe, Jasiel O., Amodeo, Giuseppe F., Bazil, Jason N., Pavlov, Evgeny V.

Journal:

Biophysical Journal

Year:

2020

File:

PDF, 50 KB

2020

42

Computationally modeling mammalian succinate dehydrogenase kinetics identifies the origins and primary determinants of ROS production

Manhas, Neeraj, Duong, Quynh V, Lee, Pilhwa, Richardson, Joshua D, Robertson, John D, Moxley, Michael A, Bazil, Jason N

Journal:

Journal of Biological Chemistry

Year:

2020

File:

PDF, 6.74 MB

2020